Demixed principal component analysis

Abstract

In many experiments, the data points collected live in high-dimensional observation spaces, yet can be assigned a set of labels or parameters. In electrophysiological recordings, for instance, the responses of populations of neurons generally depend on mixtures of experimentally controlled parameters. The heterogeneity and diversity of these parameter dependencies can make visualization and interpretation of such data extremely difficult. Standard dimensionality reduction techniques such as principal component analysis (PCA) can provide a succinct and complete description of the data, but the description is constructed independent of the relevant task variables and is often hard to interpret. Here, we start with the assumption that a particularly informative description is one that reveals the dependency of the high-dimensional data on the individual parameters. We show how to modify the loss function of PCA so that the principal components seek to capture both the maximum amount of variance about the data, while also depending on a minimum number of parameters. We call this method demixed principal component analysis (dPCA) as the principal components here segregate the parameter dependencies. We phrase the problem as a probabilistic graphical model, and present a fast Expectation-Maximization (EM) algorithm. We demonstrate the use of this algorithm for electrophysiological data and show that it serves to demix the parameter-dependence of a neural population response.

Wieland Brendel

Principal Investigator (PI)

Wieland Brendel received his Diploma in physics from the University of Regensburg (2010) and his Ph.D. in computational neuroscience from the École normale supérieure in Paris (2014). He joined the University of Tübingen as a postdoctoral researcher in the group of Matthias Bethge, became a Principal Investigator and Team Lead in the Tübingen AI Center (2018) and an Emmy Noether Group Leader for Robust Machine Learning (2020). In May 2022, Wieland joined the Max-Planck Institute for Intelligent Systems as an independent Group Leader and is now a Hector-endowed Fellow at the ELLIS Institute Tübingen (since September 2023). He received the 2023 German Pattern Recognition Award for his substantial contributions on robust, generalisable and interpretable machine vision. Aside of his research, Wieland co-founded a nationwide school competition (bw-ki.de) and a machine learning startup focused on visual quality control.